Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015923562.1_cds_XP_016472154.1_64418
CDS Infomation

[gene=LOC107794195] [db_xref=GeneID:107794195] [protein=rab9 effector protein with kelch motifs-like] [protein_id=XP_016472154.1] [location=complement(join(3314..3385,4157..4247,5053..5165,5285..5452,6819..6904,7468..7620,8315..8399,9290..9381,10643..10699,11463..11570,11663..11718,11797..11893,12524..12552,12638..12776,14572..14669,14764..14825))] [gbkey=CDS]
Sequence

ATGCATTACTGGATTCGAGCATCTTCTTCGGATTTCGCCGGAACGATTCCACAACCTCGA
AGTGGACACACTGCAGTGAACATTGGGAAATCGAAAGTTGTGGTGTTCGGCGGACTACTT
GACAAGAAGTTCCTTAATGACATCACTGTCTATGATATTGAAAACAAATTGTGGTTTCAG
CCAGATTGCACAGGCAGTGGTTCTGATGGCCAAGTGGGTCCCAGCCCACGAGCATTCCAC
GTTGCTGTATCAATTGACTGTCATATGTTCATCTTTGGTGGGAGATCTGGCAGTCGAAGA
TTAGGCGATTTTTGGGTTCTGGATACTGATATATGGCAATGGTCAGAGTTGACAAGTTTT
GGTGACTTACCTTCTGCAAGGGATTTCGCAGCTGCTTCAGCCATTGGAAACAGTAAAATT
GTTATGTATGGTGGCTGGGATGGTAAAAAGTGGTTGTCAGATGTCTATATCTTGGACACA
ATGTCTCTTGAGTGGAGGGAGTTATCTGTTTTGGGAACTTTACCGCCACCTAGATGTGGC
CATACCTCTACTATGGTCGAGAAAAGATTGCTTGTCTATGGTGGTAGAGGAGGTGGAGGG
CCAATCATGGCTGACTTGTGGGCTTTGAAGGGCCTAATTGAAGAAGAGAACGAAAGCCCT
GGATGGACCCAACTGAAGCTTCCAGGTCAAGCTCCTACAGCGCGTTGTGGACATACAGTT
ACATCTGGAGGACTCTATCTGTTGTTATTTGGAGGGCACGGAACTGGTGGTTGGTTGAGT
CGGTATGATGTTTACTACAATGATTGTGTTGTTTTAGACAGGGTCTCTGTACAGTGGAAA
CGCCTAGCAACTATGAATGTATCGCCAGCTGCACGAGCATACCACTCGATGACCTCCGTT
GGGTCACGATATTTGTTGTTTGGTGGGTTCGATGGAAAATCAACTTATGGTGATCTCTGG
TGGTTAGTTCCAGAAGATGATCCAATTGCTAAGCGCGTAACGGCTTCTCCTCCCAAGGGC
ATTCATGAAAGTCAGGATGCTTCAATGACAAGTATGGAGAAGGAGAGGCAAATGCAAGAA
GATGCTTTGGCAGAGTTGCAGAAAAGGATAGGAGTTTCAGTCTCCATCTCCAATTCCAAT
ACAAAGAAAATTGTAGATGAGTTGGAAGATACAGAATTATTAGAATTGGCATCTAAATTG
GTTGGAGAGGGAGCTCTCAGTAATAAAGAGGTTGTACAAGCACTTCGTGACCATTGGTCA
AGGTCCTCGCCAAAGTCAATTCAATTAAAGGAGCTTAGCCCATTACTTCGTGACTACCAG
CGCATGATTACCCACCTTCAGAAGGAAAAGCTAAGATCACTCTTACAATCCTCGAATGCT
GGATCGATGGGGAAAGAGACTTATAGATTCTATCATATCAGAAATATTAGTCAGCTACGT
ATGGATGATATACCACATCTGCTAGCTGAGTACAGGCAGCTCGTCGTGGATATAGGAGCA
GATTAA

Peptide Sequence

PEP ID

XP_016472154.1
PEP Infomation

PREDICTED: rab9 effector protein with kelch motifs-like [Nicotiana tabacum]
Sequence

MHYWIRASSSDFAGTIPQPRSGHTAVNIGKSKVVVFGGLLDKKFLNDITVYDIENKLWFQ
PDCTGSGSDGQVGPSPRAFHVAVSIDCHMFIFGGRSGSRRLGDFWVLDTDIWQWSELTSF
GDLPSARDFAAASAIGNSKIVMYGGWDGKKWLSDVYILDTMSLEWRELSVLGTLPPPRCG
HTSTMVEKRLLVYGGRGGGGPIMADLWALKGLIEEENESPGWTQLKLPGQAPTARCGHTV
TSGGLYLLLFGGHGTGGWLSRYDVYYNDCVVLDRVSVQWKRLATMNVSPAARAYHSMTSV
GSRYLLFGGFDGKSTYGDLWWLVPEDDPIAKRVTASPPKGIHESQDASMTSMEKERQMQE
DALAELQKRIGVSVSISNSNTKKIVDELEDTELLELASKLVGEGALSNKEVVQALRDHWS
RSSPKSIQLKELSPLLRDYQRMITHLQKEKLRSLLQSSNAGSMGKETYRFYHIRNISQLR
MDDIPHLLAEYRQLVVDIGAD

Transcript Sequence

Gene sequence data has not been registered.